Community Diversity (skbio.diversity) # This module provides functionality for analyzing biodiversity of communities – groups of organisms living in the same area.

This document provides a high-level discussion of how to work with the skbio.diversity module, and should be the first document you read before working with the module.

scikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithms and educational resources for bioinformatics. Visit the scikit-bio website: https://scikit.bio to …

Jun 18, 2025 · The diversity analysis system provides functionality for calculating biodiversity metrics on ecological and biological data. This includes both alpha diversity (within-community …

Oct 30, 2025 · Data structures, algorithms and educational resources for bioinformatics. scikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithms and …

Robust, performant and scalable algorithms tailored for the vast landscape of biological data analysis spanning genomics, microbiomics, ecology, evolutionary biology and more. Built to …

Interactive tutorials for using scikit-bio in biological research. This repository hosts tutorial materials that were initially taught during the ISMB 2024 conference. They were latter updated …

Jun 18, 2025 · Diversity Analysis (skbio.diversity): Alpha and beta diversity metrics including phylogenetic measures like UniFrac and Faith's PD. Supports both individual metric …

Oct 24, 2024 · Thank you! This website: Community Diversity (skbio.diversity) — scikit-bio 0.6.2 documentation can enter and useful.

Calculate the observed species richness of a sample. Diversity [3] measures the number and relative abundances of species (taxa) in a community. It combines richness and evenness.